SPADS 1.0

Developed by Simon Dellicour and Patrick Mardulyn

Description

SPADS 1.0 (for “Spatial and Population Analysis of DNA Sequences”) is a population genetics toolbox computing several summary statistics from populations or groups of populations, performing several input file conversions for other population genetics programs and implementing two clustering algorithms to study the genetic structure of populations. The toolbox also includes R functions to represent distance and diversity patterns across landscapes. SPADS has been specifically developed for the analysis of multi-locus datasets of DNA sequences.

1. SPADS_1.0_250416.jar program (interface)
   

2. SPADS_1.0_manual_221116.pdf manual
   

3. SPADS_1.0_example_files_221116.zip data files
   

4. SPADS_1.0_R_functions_300418.zip R functions
   

5. SPADS_1.0_java_classes_250416.zip source code
   

6. SPADZ1_060715.jar program (command line)
   

7. SPADZ2_060715.jar program (command line)
   

How to cite SPADS

Dellicour S, Mardulyn P (2014) SPADS 1.0: a toolbox to perform spatial analyses on DNA sequence data sets. Molecular Ecology Resources 14, 647-651.

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